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Dr. Temperance Brennan, a forensic anthropologist who works at the Jeffersonian Institution and also writes books, has an impressive ability to read clues from victims' bones. Consequently, law enforcement calls her to assist with investigations when remains are so badly decomposed, burned or destroyed that standard identification methods are useless. Brennan is teamed with Special Agent Seeley Booth, a former Army sniper, who mistrusts science and scientists when it comes to solving crimes but who has developed respect for Brennan, both professionally and personally.
S3, EP6 "Intern in the Incinerator"
The team suspects colleagues when the remains of a young Jeffersonian intern are found in the building's incinerator; Booth poses as Cam's boyfriend and accompanies her on a family get-together.
S3, EP7 "Boy in the Time Capsule"
When high-school classmates reunite to unearth a time capsule buried 20 years earlier, they find the corpse of an adolescent friend inside; while combing through the victim's life, the team members rehash their own teen years.
S3, EP8 "The Knight on the Grid"
After construction workers find an archbishop's body with the kneecaps surgically removed, the team returns to the case of the Widow's Son serial killer.
S3, EP9 "The Santa in the Slush"
Three days before Christmas the body of a bearded man in a tailor-made Santa outfit turns up in a sewer; Brennan visits her father in prison and plots a nontraditional holiday reunion.
S3, EP5 "Mummy in the Maze"
When mummified remains are found at Halloween attractions, Brennan and Booth realize that they must find the killer by Halloween or there will be another death.
S3, EP4 "The Secret in the Soil"
When the founder of an organic supermarket chain is found dead, Brennan and Booth suspect foul play by a rival farmer; the two agents visit a new psychiatrist, who warns that the FBI may separate them.
S3, EP3 "Death in the Saddle"
The team investigates a footless corpse that was found in the woods; Brennan and Booth's questioning leads to several suspects, including the victim's wife; Angela agrees to undergo hypnosis to remember her former husband's name.
S3, EP2 "The Soccer Mom in the Mini-Van"
Brennan and Booth investigate when a soccer mom is blown up in her minivan; the investigation uncovers that the woman was a member of the National Liberation Army.