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Dr. Temperance Brennan, a forensic anthropologist who works at the Jeffersonian Institution and also writes books, has an impressive ability to read clues from victims' bones. Consequently, law enforcement calls her to assist with investigations when remains are so badly decomposed, burned or destroyed that standard identification methods are useless. Brennan is teamed with Special Agent Seeley Booth, a former Army sniper, who mistrusts science and scientists when it comes to solving crimes but who has developed respect for Brennan, both professionally and personally.
S9, EP1 "The Secrets in the Proposal"
The remains of an accountant for the state department are found in a hotel air conditioning unit; Booth finds an Army buddy and CIA agent, Danny Beck, removing evidence from the victim's condo; Brennan contemplates her future with Booth.
S9, EP2 "The Cheat in the Retreat"
The investigation into the murder of a management consultant whose remains were partially eaten by bobcats leads to a marriage retreat site; Cam's identity is stolen; Sweets decides to take a leave of absence.
S9, EP3 "El Carnicero en el Coche"
The team investigates when a gang member's remains are found in a burnt-out car; when Sweets learns that one of the boys from the center where he volunteers is a gang member's son, he decides to help.
S9, EP4 "The Sense in the Sacrifice"
The team devises a plan to use a donated cadaver to draw out Pelant; Sweets returns to work and believes Agent Flynn isn't who he seems.
S9, EP24 "The Recluse in the Recliner"
A man who wanted to talk to Booth about a possible government cover-up is killed before their meeting takes place; as Booth and the team investigate the conspiracy surrounding the man's death, Booth's future with the FBI becomes uncertain.
S9, EP23 "The Drama in the Queen"
When the head swim coach of a community college is found dead at the bottom of the well, possible suspects think he may have been having an affair; a new intern (Laura Spencer) catches Sweets' attention.
S9, EP22 "The Nail in the Coffin"
When the remains of a woman from a wealthy family are found in a national park, the team thinks she may be a victim of the Ghost Killer; Booth's career might be in for some changes.