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Dr. Temperance Brennan, a forensic anthropologist who works at the Jeffersonian Institution and also writes books, has an impressive ability to read clues from victims' bones. Consequently, law enforcement calls her to assist with investigations when remains are so badly decomposed, burned or destroyed that standard identification methods are useless. Brennan is teamed with Special Agent Seeley Booth, a former Army sniper, who mistrusts science and scientists when it comes to solving crimes but who has developed respect for Brennan, both professionally and personally.
S1, EP16 "The Woman in the Tunnel"
When the remains of a filmmaker are found in the ventilation shaft of an underground tunnel, Brennan and Booth discover a subterranean world of homeless people.
S1, EP17 "The Skull in the Desert"
The investigation of the bones of a shooting victim leads to a counterfeiting ring.
S1, EP18 "The Man With the Bone"
When a body is found clutching a 300-year-old finger bone, Booth and Brennan's investigation leads them to a dive site where a pirate may have buried his treasure.
S1, EP19 "The Man in the Morgue"
Brennan wakes up in the bathroom of her New Orleans motel room, bloodied and beaten with no memory of what happened.
S3, EP10 "The Man in the Mud"
When the remains of a professional motorcycle racer are found in a hot spring, the team suspects his rival to be the murderer; Dr. Lance Sweets forces Booth and Brennan to accompany him on a double date.
S3, EP9 "The Santa in the Slush"
Three days before Christmas the body of a bearded man in a tailor-made Santa outfit turns up in a sewer; Brennan visits her father in prison and plots a nontraditional holiday reunion.
S3, EP8 "The Knight on the Grid"
After construction workers find an archbishop's body with the kneecaps surgically removed, the team returns to the case of the Widow's Son serial killer.
S3, EP7 "Boy in the Time Capsule"
When high-school classmates reunite to unearth a time capsule buried 20 years earlier, they find the corpse of an adolescent friend inside; while combing through the victim's life, the team members rehash their own teen years.